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Crystal structure of the aquifex aeolicus wzt carbohydrate binding domain

Analyse Crystal structure of the aquifex aeolicus wzt carbohydrate binding domain in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 6O14
Type: protein
Length: 288 residues
Chains: 2
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: ABC transporter
UniProt: O67181
Pockets: 2 · best druggability 0.47

Structure

x-ray diffraction · 2 distinct chains · 0% helix, 64% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	ABC transporter	protein	145	0% helix, 62% strand	O67181
B	ABC transporter	protein	143	0% helix, 65% strand	O67181

Ligands and binding sites

GOL · Glycerol · additive · 2 copies · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

2 pockets found on a 1 Å grid, 0 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	142	0.47	0.77	19	empty
2	127	0.44	0.76	19	empty

Interfaces

1 interface between chains.

A–B · 2311 Å² buried · 42 hydrogen bonds · protein-protein

Compared structures

6O14 · Crystal structure of the Aquifex aeolicus Wzt Carbohydrate Binding Domain · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt O67181
Elsewhere: RCSB PDB 6O14 · PDBe 6O14 · UniProt O67181

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