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The crystal structure of CROV588 a novel circular lrr protein structure

Analyse The crystal structure of CROV588 a novel circular lrr protein structure in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 6NYS
Type: protein
Length: 1,358 residues
Chains: 2
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: CROV588
Ligands: TEW
Pockets: 10 · best druggability 0.50

Structure

x-ray diffraction · 1 distinct chain · 3% helix, 15% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
B, A	CROV588	protein	679	3% helix, 15% strand	—

Ligands and binding sites

TEW · 6-tungstotellurate(VI) · ligand · 14 copies · chains B, A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

10 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	210	0.50	0.76	31	empty
2	133	0.44	0.76	24	empty
3	79	0.38	0.77	21	empty
4	122	0.36	0.72	20	empty
5	110	0.34	0.72	19	empty

Interfaces

1 interface between chains.

B–A · 623 Å² buried · 8 hydrogen bonds · protein-protein

Compared structures

6NYS · The crystal structure of CroV588 a novel circular LRR protein structure · the same entry in another collection · chain B against B, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Elsewhere: RCSB PDB 6NYS · PDBe 6NYS

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