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Structure of sucrose-6-phosphate hydrolase from lactobacillus gasseri in complex with fructose

Analyse Structure of sucrose-6-phosphate hydrolase from lactobacillus gasseri in… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 6NU8
Type: protein
Length: 488 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Sucrose-6-phosphate hydrolase
EC: 3.2.1.26
UniProt: D1YK18
Ligands: FRU
Pockets: 7 · best druggability 0.61

Structure

x-ray diffraction · 1 distinct chain · 8% helix, 50% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Sucrose-6-phosphate hydrolase (EC 3.2.1.26)	protein	488	8% helix, 50% strand	D1YK18

Ligands and binding sites

FRU · beta-D-fructofuranose · sugar · chains A
EDO · 1,2-ethanediol · additive · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

7 pockets found on a 1 Å grid, 3 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	266	0.61	0.80	41	FRU
2	59	0.57	0.90	16	empty
3	153	0.53	0.80	24	empty
4	90	0.39	0.77	22	empty
5	60	0.38	0.79	16	empty

Compared structures

6NU8 · Structure of sucrose-6-phosphate hydrolase from Lactobacillus gasseri in complex with… · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt D1YK18
Elsewhere: RCSB PDB 6NU8 · PDBe 6NU8 · UniProt D1YK18

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