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The crystal structure of class D carbapenem-hydrolyzing beta-lactamase blaa from shewanella oneidensis mr-1
Analyse The crystal structure of class D carbapenem-hydrolyzing beta-lactamase blaa… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 6NLW
- Type
- protein
- Length
- 970 residues
- Chains
- 4
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- UniProt
- Q6RFZ0
- Ligands
- SO4, CL
Structure
x-ray diffraction · 2 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, C | — | protein | 243 | — | Q6RFZ0 |
| B, D | — | protein | 242 | — | Q6RFZ0 |
Ligands and binding sites
- SO4 · Sulfate ion · ion · 26 copies · chains A, B, C, D
- CL · Chloride ion · ion · 6 copies · chains A, B, C, D
- FMT · Formic acid · additive · 9 copies · chains A, B, C, D
- GOL · Glycerol · additive · 5 copies · chains A, B, C, D
- PEG · Di(hydroxyethyl)ether · additive · chains B
- MLA · Malonic acid · additive · chains C, D
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 6NLW · The crystal structure of class D carbapenem-hydrolyzing beta-lactamase BlaA from… · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q6RFZ0
- Elsewhere: RCSB PDB 6NLW · PDBe 6NLW · UniProt Q6RFZ0
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