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C-terminal region of the burkholderia pseudomallei old protein

Analyse C-terminal region of the burkholderia pseudomallei old protein in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 6NK8
Type: protein
Length: 402 residues
Chains: 2
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Class 2 old family nuclease
UniProt: A3NFC3
Ligands: MG
Pockets: 1 · best druggability 0.63

Structure

x-ray diffraction · 2 distinct chains · 57% helix, 9% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Class 2 old family nuclease	protein	198	58% helix, 9% strand	A3NFC3
B	Class 2 old family nuclease	protein	204	56% helix, 10% strand	A3NFC3

Ligands and binding sites

MG · Magnesium ion · metal · 6 copies · chains A, B

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

1 pocket found on a 1 Å grid, 1 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	390	0.63	0.78	35	empty

Interfaces

1 interface between chains.

A–B · 794 Å² buried · 14 hydrogen bonds · protein-protein

Compared structures

6NK8 · C-terminal region of the Burkholderia pseudomallei OLD protein · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt A3NFC3
Elsewhere: RCSB PDB 6NK8 · PDBe 6NK8 · UniProt A3NFC3

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