Research workbench
Crystal structure of ravd (residues 1-200) from legionella pneumophila (strain corby)
Analyse Crystal structure of ravd (residues 1-200) from legionella pneumophila (strain… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 6NII
- Type
- protein
- Length
- 346 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Uncharacterized protein ravd
- Pockets
- 1 · best druggability 0.64
Structure
x-ray diffraction · 2 distinct chains · 35% helix, 27% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| B | Uncharacterized protein ravd | protein | 179 | 32% helix, 26% strand | — |
| A | Uncharacterized protein ravd | protein | 167 | 38% helix, 28% strand | — |
Pockets
1 pocket found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 427 | 0.64 | 0.78 | 41 | empty |
Interfaces
1 interface between chains.
- B–A · 735 Ų buried · 10 hydrogen bonds · protein-protein
Compared structures
- 6NII · Crystal structure of RavD (residues 1-200) from Legionella pneumophila (strain Corby) · the same entry in another collection · chain B against B, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Elsewhere: RCSB PDB 6NII · PDBe 6NII
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