Research workbench
Potyvirus viral protein genome linked (vpg) emulates the M7G cap to recruit the eukaryotic translation initiation factor EIF4E
Analyse Potyvirus viral protein genome linked (vpg) emulates the M7G cap to recruit the… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 6NFW
- Type
- protein
- Length
- 151 residues
- Chains
- 1
- Method
- solution nmr
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Vpg
- UniProt
- A6YPB3
- Pockets
- 3 · best druggability 0.44
Structure
solution nmr · 1 distinct chain · 12% helix, 16% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Vpg | protein | 151 | 12% helix, 16% strand | A6YPB3 |
Pockets
3 pockets found on a 1 Å grid, 0 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 117 | 0.44 | 0.77 | 22 | empty |
| 2 | 95 | 0.34 | 0.73 | 14 | empty |
| 3 | 54 | 0.34 | 0.78 | 16 | empty |
Compared structures
- 6NFW · Potyvirus viral protein genome linked (VPg) emulates the m7G cap to recruit the… · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt A6YPB3
- Elsewhere: RCSB PDB 6NFW · PDBe 6NFW · UniProt A6YPB3
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