Research workbench
Structure of M. spretus endogenous virus element (eve) virus-like particle (vlp)
Analyse Structure of M. spretus endogenous virus element (eve) virus-like particle (vlp) in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 6NF9
- Type
- protein
- Length
- 541 residues
- Chains
- 1
- Method
- electron microscopy
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Mus spretus endogenous viral element
- Pockets
- 7 · best druggability 0.61
Structure
electron microscopy · 1 distinct chain · 5% helix, 29% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Mus spretus endogenous viral element | protein | 541 | 5% helix, 29% strand | — |
Pockets
7 pockets found on a 1 Å grid, 3 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 432 | 0.61 | 0.76 | 54 | empty |
| 2 | 238 | 0.53 | 0.76 | 38 | empty |
| 3 | 352 | 0.52 | 0.73 | 36 | empty |
| 4 | 123 | 0.46 | 0.78 | 22 | empty |
| 5 | 107 | 0.43 | 0.78 | 25 | empty |
Compared structures
- 6NF9 · Structure of M. spretus Endogenous Virus Element (EVE) Virus-like particle (VLP) · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Elsewhere: RCSB PDB 6NF9 · PDBe 6NF9
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