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Crystal structure of a lpmo from kitasatospora papulosa

Analyse Crystal structure of a lpmo from kitasatospora papulosa in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 6NDQ
Type: protein
Length: 379 residues
Chains: 2
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Lytic polysaccharide monooxygenase
UniProt: E8W3L9
Pockets: 1 · best druggability 0.37

Structure

x-ray diffraction · 2 distinct chains · 24% helix, 34% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Lytic polysaccharide monooxygenase	protein	190	25% helix, 34% strand	E8W3L9
B	Lytic polysaccharide monooxygenase	protein	189	23% helix, 34% strand	E8W3L9

Pockets

1 pocket found on a 1 Å grid, 0 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	102	0.37	0.75	24	empty

Interfaces

1 interface between chains.

A–B · 809 Å² buried · 9 hydrogen bonds · protein-protein

Modifications

Observed in the structure: 4 disulfide (disulfide).

Compared structures

6NDQ · Crystal structure of a LPMO from Kitasatospora papulosa · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt E8W3L9
Elsewhere: RCSB PDB 6NDQ · PDBe 6NDQ · UniProt E8W3L9

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