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Crystal structure of ATPase DELTA1-79 SPA47 R271A

Analyse Crystal structure of ATPase DELTA1-79 SPA47 R271A in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB
6N73
Type
protein
Length
666 residues
Chains
2
Method
x-ray diffraction
Collection
MolNFT v1 / PDB
Contract
0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner
0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule
ATP synthase SPAL/MXIB
EC
7.1.2.2
UniProt
P0A1C1
Pockets
8 · best druggability 0.70

Structure

x-ray diffraction · 2 distinct chains · 45% helix, 20% strand (DSSP).

ChainMoleculeTypeResiduesSecondary structureUniProt
AATP synthase SPAL/MXIB (EC 7.1.2.2)protein33545% helix, 20% strandP0A1C1
BATP synthase SPAL/MXIB (EC 7.1.2.2)protein33145% helix, 21% strandP0A1C1

Pockets

8 pockets found on a 1 Å grid, 5 with a druggability of 0.5 or more.

PocketVolume (ų)DruggabilityBuriednessLining residuesInside
17880.700.7775empty
21370.560.8233empty
31650.530.7928empty
4850.520.8418empty
51020.520.8319empty

Interfaces

1 interface between chains.

  • A–B · 392 Ų buried · 7 hydrogen bonds · protein-protein

Compared structures

  • 6N73 · Crystal Structure of ATPase delta1-79 Spa47 R271A · the same entry in another collection · chain A against A, TM-score 1.00
  • P0A1C1 · AlphaFold monomer V2.0 prediction for type 3 secretion system ATPase (P0A1C1) · a predicted model of the same protein · chain B against A, TM-score 0.99

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