Research workbench
Structure of L509V CAO1 - growth condition 1
Analyse Structure of L509V CAO1 - growth condition 1 in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 6N1Y
- Type
- protein
- Length
- 1,988 residues
- Chains
- 4
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Carotenoid oxygenase
- UniProt
- A0A0B0DIC8
- Ligands
- FE2, CL
- Pockets
- 20 · best druggability 0.88
Structure
x-ray diffraction · 1 distinct chain · 8% helix, 38% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, B, C, D | Carotenoid oxygenase | protein | 497 | 8% helix, 38% strand | A0A0B0DIC8 |
Ligands and binding sites
- FE2 · Fe (II) ion · metal · 4 copies · chains A, B, C, D
- CL · Chloride ion · ion · 4 copies · chains A, B, C, D
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
20 pockets found on a 1 Å grid, 14 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 1064 | 0.88 | 0.89 | 142 | empty |
| 2 | 782 | 0.84 | 0.87 | 104 | empty |
| 3 | 664 | 0.84 | 0.88 | 80 | empty |
| 4 | 631 | 0.84 | 0.88 | 81 | empty |
| 5 | 641 | 0.84 | 0.88 | 77 | empty |
Interfaces
4 interfaces between chains.
- B–D · 1522 Ų buried · 37 hydrogen bonds · protein-protein
- A–C · 1519 Ų buried · 37 hydrogen bonds · protein-protein
- B–C · 385 Ų buried · 3 hydrogen bonds · protein-protein
- A–D · 372 Ų buried · 3 hydrogen bonds · protein-protein
Compared structures
- 6N1Y · Structure of L509V CAO1 - growth condition 1 · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt A0A0B0DIC8
- Elsewhere: RCSB PDB 6N1Y · PDBe 6N1Y · UniProt A0A0B0DIC8
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