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1.67 ångström resolution crystal structure of murein-dd-endopeptidase from yersinia enterocolitica.

Analyse 1.67 ångström resolution crystal structure of murein-dd-endopeptidase from… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 6MUQ
Type: protein
Length: 267 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Murein-dd-endopeptidase
UniProt: A0A0H3NPR7
Ligands: SO4
Pockets: 1 · best druggability 0.26

Structure

x-ray diffraction · 1 distinct chain · 36% helix, 24% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Murein-dd-endopeptidase	protein	267	36% helix, 24% strand	A0A0H3NPR7

Ligands and binding sites

SO4 · Sulfate ion · ion · chains A
ACT · Acetate ion · additive · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

1 pocket found on a 1 Å grid, 0 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	54	0.26	0.73	21	empty

Modifications

Observed in the structure: 11 modified (engineered).

Compared structures

6MUQ · 1.67 Angstrom Resolution Crystal Structure of Murein-DD-endopeptidase from Yersinia… · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt A0A0H3NPR7
Elsewhere: RCSB PDB 6MUQ · PDBe 6MUQ · UniProt A0A0H3NPR7

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