Research workbench
Molecular structure of nicked DNA. model T4
Analyse Molecular structure of nicked DNA. model T4 in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 1NDN
- Type
- DNA
- Length
- 24 nucleotides
- Chains
- 3
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- DNA (5'-D(*CP*GP*CP*GP*AP*AP*AP*AP*CP*GP*CP*G)- 3'); DNA (5'-D(*CP*GP*CP*GP*TP*T)-3')…
Structure
x-ray diffraction · 3 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | DNA (5'-D(*CP*GP*CP*GP*AP*AP*AP*AP*CP*GP*CP*G)- 3') | dna | 12 | — | — |
| B | DNA (5'-D(*CP*GP*CP*GP*TP*T)-3') | dna | 6 | — | — |
| C | DNA (5'-D(*TP*TP*CP*GP*CP*G)-3') | dna | 6 | — | — |
Interfaces
3 interfaces between chains.
- A–C · 345 Ų buried · 36 hydrogen bonds · nucleic-nucleic
- A–B · 287 Ų buried · 19 hydrogen bonds · nucleic-nucleic
- B–C · 110 Ų buried · 6 hydrogen bonds · nucleic-nucleic
Compared structures
- 1NDN · Molecular structure of nicked DNA. model T4 · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Elsewhere: RCSB PDB 1NDN · PDBe 1NDN
GL1X is a live explorer of the GenesisL1 blockchain. Turn on JavaScript for search, charts and interactive views.