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Crystal structure of human scribble PDZ1:MCC complex

Analyse Crystal structure of human scribble PDZ1:MCC complex in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB
6MTV
Type
protein
Length
209 residues
Chains
4
Method
x-ray diffraction
Collection
MolNFT v1 / PDB
Contract
0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner
0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule
Protein scribble homolog; Colorectal mutant cancer protein
UniProt
Q14160
Ligands
SO4

Structure

x-ray diffraction · 4 distinct chains · 13% helix, 37% strand (DSSP).

ChainMoleculeTypeResiduesSecondary structureUniProt
AProtein scribble homologprotein9814% helix, 39% strandQ14160
BProtein scribble homologprotein9913% helix, 34% strandQ14160
DColorectal mutant cancer proteinprotein70% helix, 43% strand—
EColorectal mutant cancer proteinprotein50% helix, 40% strand—

Ligands and binding sites

  • SO4 · Sulfate ion · ion · 4 copies · chains A, B
  • PEG · Di(hydroxyethyl)ether · additive · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Interfaces

3 interfaces between chains.

  • A–B · 495 Ų buried · 3 hydrogen bonds · protein-protein
  • A–D · 439 Ų buried · 13 hydrogen bonds · protein-protein
  • B–E · 325 Ų buried · 6 hydrogen bonds · protein-protein

Compared structures

  • 6MTV · Crystal structure of human Scribble PDZ1:MCC complex · the same entry in another collection · chain A against A, TM-score 1.00
  • Q14160 · AlphaFold monomer V2.0 prediction for protein scribble homolog (Q14160) · a predicted model of the same protein · chain A against A, TM-score 0.86

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