Research workbench
Photoactive yellow protein with 3,5-dichlorotyrosine substituted at position 42
Analyse Photoactive yellow protein with 3,5-dichlorotyrosine substituted at position 42 in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 6MMD
- Type
- protein
- Length
- 250 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Photoactive yellow protein
- UniProt
- P16113
- Ligands
- HC4
Structure
x-ray diffraction · 1 distinct chain · 33% helix, 28% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, B | Photoactive yellow protein | protein | 125 | 33% helix, 28% strand | P16113 |
Ligands and binding sites
- HC4 · 4'-hydroxycinnamic acid · ligand · 2 copies · chains A, B
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Interfaces
1 interface between chains.
- A–B · 665 Ų buried · 7 hydrogen bonds · protein-protein
Modifications
Observed in the structure: 2 covalent, 2 modified (covalent ligand, nonstandard).
Compared structures
- 6MMD · Photoactive Yellow Protein with 3,5-dichlorotyrosine substituted at position 42 · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P16113
- Elsewhere: RCSB PDB 6MMD · PDBe 6MMD · UniProt P16113
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