Research workbench
The peptide PAAMP1B3 is an analog derived from the PAAMP1. the sequence of the ribosomal protein of pyrobaculum aerophylum was used as template for rational design, using the joker algorithm.
Analyse The peptide PAAMP1B3 is an analog derived from the PAAMP1. the sequence of the… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 6MI9
- Type
- protein
- Length
- 19 residues
- Chains
- 1
- Method
- solution nmr
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Pro-met-ala-arg-asn-lys-ile-leu-gly-lys-ile-leu-arg-lys- ile-ala-ala-phe-lys
- Ligands
- NH2
Structure
solution nmr · 1 distinct chain · 89% helix, 0% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Pro-met-ala-arg-asn-lys-ile-leu-gly-lys-ile-leu-arg-lys- ile-ala-ala-phe-lys | protein | 19 | 89% helix, 0% strand | — |
Ligands and binding sites
- NH2 · Amino group · ion · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 6MI9 · The peptide PaAMP1B3 is an analog derived from the PaAMP1. The sequence of the ribosomal… · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Elsewhere: RCSB PDB 6MI9 · PDBe 6MI9
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