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Crystal structure of ppra dimer from deinococcus deserti
Analyse Crystal structure of ppra dimer from deinococcus deserti in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 6MC8
- Type
- protein
- Length
- 549 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- DNA repair protein ppra
- UniProt
- C1D318
- Pockets
- 5 · best druggability 0.60
Structure
x-ray diffraction · 2 distinct chains · 50% helix, 19% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | DNA repair protein ppra | protein | 275 | 50% helix, 19% strand | C1D318 |
| B | DNA repair protein ppra | protein | 274 | 49% helix, 18% strand | C1D318 |
Pockets
5 pockets found on a 1 Å grid, 2 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 238 | 0.60 | 0.80 | 44 | empty |
| 2 | 82 | 0.50 | 0.83 | 19 | empty |
| 3 | 144 | 0.48 | 0.78 | 27 | empty |
| 4 | 114 | 0.43 | 0.78 | 19 | empty |
| 5 | 51 | 0.27 | 0.75 | 16 | empty |
Interfaces
1 interface between chains.
- A–B · 799 Ų buried · 11 hydrogen bonds · protein-protein
Compared structures
- 6MC8 · Crystal structure of PprA dimer from Deinococcus deserti · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt C1D318
- Elsewhere: RCSB PDB 6MC8 · PDBe 6MC8 · UniProt C1D318
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