Research workbench
Wild-type cucumene synthase
Analyse Wild-type cucumene synthase in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 6M7F
- Type
- protein
- Length
- 1,041 residues
- Chains
- 4
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Cucumene synthase
- UniProt
- B5GLM7
- Pockets
- 15 · best druggability 0.73
Structure
x-ray diffraction · 4 distinct chains · 71% helix, 0% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Cucumene synthase | protein | 292 | 73% helix, 0% strand | B5GLM7 |
| B | Cucumene synthase | protein | 240 | 70% helix, 0% strand | B5GLM7 |
| C | Cucumene synthase | protein | 275 | 72% helix, 0% strand | B5GLM7 |
| D | Cucumene synthase | protein | 234 | 70% helix, 0% strand | B5GLM7 |
Pockets
15 pockets found on a 1 Å grid, 8 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 718 | 0.73 | 0.79 | 48 | empty |
| 2 | 563 | 0.71 | 0.80 | 42 | empty |
| 3 | 597 | 0.68 | 0.77 | 41 | empty |
| 4 | 308 | 0.65 | 0.80 | 28 | empty |
| 5 | 300 | 0.56 | 0.76 | 40 | empty |
Interfaces
5 interfaces between chains.
- C–D · 1389 Ų buried · 7 hydrogen bonds · protein-protein
- A–B · 1388 Ų buried · 4 hydrogen bonds · protein-protein
- B–C · 314 Ų buried · 4 hydrogen bonds · protein-protein
- B–D · 138 Ų buried · 0 hydrogen bonds · protein-protein
- A–C · 101 Ų buried · 0 hydrogen bonds · protein-protein
Compared structures
- 6M7F · Wild-type Cucumene Synthase · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt B5GLM7
- Elsewhere: RCSB PDB 6M7F · PDBe 6M7F · UniProt B5GLM7
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