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Structure of ncleoprotein of sendai virus
Analyse Structure of ncleoprotein of sendai virus in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 6M7D
- Type
- protein + RNA
- Length
- 418 residues
- Chains
- 2
- Method
- electron microscopy
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Nucleoprotein; RNA (5'-R(P*UP*UP*UP*UP*UP*U)-3')
- UniProt
- O57286
- Pockets
- 4 · best druggability 0.56
Structure
electron microscopy · 2 distinct chains · 57% helix, 7% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Nucleoprotein | protein | 412 | 57% helix, 7% strand | O57286 |
| B | RNA (5'-R(P*UP*UP*UP*UP*UP*U)-3') | rna | 6 | — | — |
Pockets
4 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 132 | 0.56 | 0.83 | 29 | empty |
| 2 | 52 | 0.33 | 0.78 | 15 | empty |
| 3 | 71 | 0.30 | 0.73 | 14 | empty |
| 4 | 50 | 0.25 | 0.73 | 12 | empty |
Interfaces
1 interface between chains.
- A–B · 755 Ų buried · 15 hydrogen bonds · protein-nucleic
Compared structures
- 6M7D · Structure of ncleoprotein of sendai virus · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt O57286
- Elsewhere: RCSB PDB 6M7D · PDBe 6M7D · UniProt O57286
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