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Crystal structure of C-terminal fragment of pilus adhesin spac from lactobacillus rhamnosus gg
Analyse Crystal structure of C-terminal fragment of pilus adhesin spac from… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 6M7C
- Type
- protein
- Length
- 262 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Pilus assembly protein
- UniProt
- A0A1Y0DVK9
- Pockets
- 2 · best druggability 0.76
Structure
x-ray diffraction · 1 distinct chain · 1% helix, 50% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Pilus assembly protein | protein | 262 | 1% helix, 50% strand | A0A1Y0DVK9 |
Pockets
2 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 177 | 0.76 | 0.92 | 46 | empty |
| 2 | 120 | 0.41 | 0.76 | 26 | empty |
Modifications
Observed in the structure: 2 isopeptide (isopeptide).
Compared structures
- 6M7C · Crystal structure of C-terminal fragment of pilus adhesin SpaC from Lactobacillus… · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt A0A1Y0DVK9
- Elsewhere: RCSB PDB 6M7C · PDBe 6M7C · UniProt A0A1Y0DVK9
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