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C-myc DNA binding protein complex

Analyse C-myc DNA binding protein complex in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 6M75
Type: protein + DNA
Length: 173 residues
Chains: 2
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: RNA-binding motif, single-stranded-interacting protein 1; DNA…
UniProt: P29558
Ligands: SO4

Structure

x-ray diffraction · 2 distinct chains · 28% helix, 31% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	RNA-binding motif, single-stranded-interacting protein 1	protein	167	28% helix, 31% strand	P29558
C	DNA (5'-D(TPCPTPTPAPTP*T)-3')	dna	6	—	—

Ligands and binding sites

SO4 · Sulfate ion · ion · 10 copies · chains A, C

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Interfaces

1 interface between chains.

A–C · 587 Å² buried · 7 hydrogen bonds · protein-nucleic

Compared structures

6M75 · C-Myc DNA binding protein complex · the same entry in another collection · chain A against A, TM-score 1.00
P29558 · AlphaFold monomer V2.0 prediction for RNA-binding motif, single- stranded-interacting… · a predicted model of the same protein · chain A against A, TM-score 0.54

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt P29558
Elsewhere: RCSB PDB 6M75 · PDBe 6M75 · UniProt P29558

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