Research workbench
The coordinate of the nuclease domain of the apo terminase complex
Analyse The coordinate of the nuclease domain of the apo terminase complex in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 6M5T
- Type
- protein
- Length
- 244 residues
- Chains
- 1
- Method
- electron microscopy
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Tripartite terminase subunit 3
- EC
- 3.1.-.-
- UniProt
- P04295
- Pockets
- 3 · best druggability 0.33
Structure
electron microscopy · 1 distinct chain · 36% helix, 17% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Tripartite terminase subunit 3 (EC 3.1.-.-) | protein | 244 | 36% helix, 17% strand | P04295 |
Pockets
3 pockets found on a 1 Å grid, 0 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 61 | 0.33 | 0.77 | 13 | empty |
| 2 | 75 | 0.32 | 0.74 | 19 | empty |
| 3 | 59 | 0.28 | 0.74 | 22 | empty |
Compared structures
- 6M5T · The coordinate of the nuclease domain of the apo terminase complex · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P04295
- Elsewhere: RCSB PDB 6M5T · PDBe 6M5T · UniProt P04295
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