Research workbench
Crystal structure of the NS3-like helicase from alongshan virus
Analyse Crystal structure of the NS3-like helicase from alongshan virus in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 6M40
- Type
- protein
- Length
- 379 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- NS3-like protein
- UniProt
- A0A344X2I9
- Pockets
- 3 · best druggability 0.76
Structure
x-ray diffraction · 1 distinct chain · 35% helix, 21% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | NS3-like protein | protein | 379 | 35% helix, 21% strand | A0A344X2I9 |
Pockets
3 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 1139 | 0.76 | 0.78 | 85 | empty |
| 2 | 126 | 0.44 | 0.77 | 25 | empty |
| 3 | 57 | 0.28 | 0.74 | 13 | empty |
Modifications
Observed in the structure: 11 modified (engineered).
Compared structures
- 6M40 · Crystal structure of the NS3-like helicase from Alongshan virus · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt A0A344X2I9
- Elsewhere: RCSB PDB 6M40 · PDBe 6M40 · UniProt A0A344X2I9
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