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Crystal structure of pilus adhesin, spac from lactobacillus rhamnosus gg - open conformation

Analyse Crystal structure of pilus adhesin, spac from lactobacillus rhamnosus gg - open… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 6M3Y
Type: protein
Length: 811 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Pilus assembly protein
UniProt: A0A1Y0DVK9
Ligands: MG
Pockets: 4 · best druggability 0.49

Structure

x-ray diffraction · 1 distinct chain · 13% helix, 45% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Pilus assembly protein	protein	811	13% helix, 45% strand	A0A1Y0DVK9

Ligands and binding sites

MG · Magnesium ion · metal · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

4 pockets found on a 1 Å grid, 0 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	146	0.49	0.78	21	empty
2	67	0.39	0.79	16	empty
3	138	0.39	0.73	23	empty
4	53	0.27	0.74	13	empty

Modifications

Observed in the structure: 4 isopeptide (isopeptide).

Compared structures

6M3Y · Crystal structure of pilus adhesin, SpaC from Lactobacillus rhamnosus GG - open… · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt A0A1Y0DVK9
Elsewhere: RCSB PDB 6M3Y · PDBe 6M3Y · UniProt A0A1Y0DVK9

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