Research workbench
Structural insight into the biological functions of arabidopsis thaliana ACHT1
Analyse Structural insight into the biological functions of arabidopsis thaliana ACHT1 in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 6LYW
- Type
- protein
- Length
- 239 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Thioredoxin-like 2-1, chloroplastic
- UniProt
- Q8LEK4
- Ligands
- SO4
- Pockets
- 1 · best druggability 0.43
Structure
x-ray diffraction · 2 distinct chains · 43% helix, 26% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Thioredoxin-like 2-1, chloroplastic | protein | 121 | 42% helix, 26% strand | Q8LEK4 |
| B | Thioredoxin-like 2-1, chloroplastic | protein | 118 | 43% helix, 25% strand | Q8LEK4 |
Ligands and binding sites
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
1 pocket found on a 1 Å grid, 0 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 161 | 0.43 | 0.74 | 25 | empty |
Interfaces
1 interface between chains.
- A–B · 517 Ų buried · 4 hydrogen bonds · protein-protein
Compared structures
- 6LYW · Structural insight into the biological functions of Arabidopsis thaliana ACHT1 · the same entry in another collection · chain A against A, TM-score 1.00
- Q8LEK4 · AlphaFold monomer V2.0 prediction for thioredoxin-like 2-1, chloroplastic (Q8LEK4) · a predicted model of the same protein · chain B against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q8LEK4
- Elsewhere: RCSB PDB 6LYW · PDBe 6LYW · UniProt Q8LEK4
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