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Crystal structure of mimivirus ung Y322L in complex with ugi

Analyse Crystal structure of mimivirus ung Y322L in complex with ugi in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 6LYD
Type: protein
Length: 354 residues
Chains: 2
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Probable uracil-DNA glycosylase; Uracil-DNA glycosylase inhibitor
EC: 3.2.2.-
UniProt: Q5UPT2, P14739
Pockets: 2 · best druggability 0.67

Structure

x-ray diffraction · 2 distinct chains · 32% helix, 20% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Probable uracil-DNA glycosylase (EC 3.2.2.-)	protein	271	36% helix, 13% strand	Q5UPT2
I	Uracil-DNA glycosylase inhibitor	protein	83	22% helix, 42% strand	P14739

Pockets

2 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	276	0.67	0.83	47	empty
2	115	0.39	0.75	24	empty

Interfaces

1 interface between chains.

A–I · 1051 Å² buried · 9 hydrogen bonds · protein-protein

Compared structures

6LYD · Crystal Structure of mimivirus UNG Y322L in complex with UGI · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt Q5UPT2
Every structure of UniProt P14739
Elsewhere: RCSB PDB 6LYD · PDBe 6LYD · UniProt Q5UPT2 · UniProt P14739

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