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Crystal structure of the soluble domain of the multiple peptide resistance factor (mprf) from rhizobium tropici

Analyse Crystal structure of the soluble domain of the multiple peptide resistance… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 6LV0
Type: protein
Length: 638 residues
Chains: 2
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Low pH-inducible protein lpia
UniProt: L0LM43
Pockets: 8 · best druggability 0.78

Structure

x-ray diffraction · 1 distinct chain · 39% helix, 26% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A, B	Low pH-inducible protein lpia	protein	319	39% helix, 26% strand	L0LM43

Pockets

8 pockets found on a 1 Å grid, 3 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	140	0.78	0.96	32	empty
2	702	0.76	0.81	93	empty
3	111	0.51	0.81	23	empty
4	120	0.48	0.80	23	empty
5	124	0.39	0.74	30	empty

Interfaces

1 interface between chains.

A–B · 1175 Å² buried · 17 hydrogen bonds · protein-protein

Compared structures

6LV0 · Crystal structure of the soluble domain of the multiple peptide resistance factor (MprF)… · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt L0LM43
Elsewhere: RCSB PDB 6LV0 · PDBe 6LV0 · UniProt L0LM43

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