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The NSP1 protein of a new porcine coronavirus

Analyse The NSP1 protein of a new porcine coronavirus in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 6LPA
Type: protein
Length: 202 residues
Chains: 2
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: SP1 protein
UniProt: A0A2P1G738
Pockets: 1 · best druggability 0.48

Structure

x-ray diffraction · 1 distinct chain · 16% helix, 47% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A, B	SP1 protein	protein	101	16% helix, 47% strand	A0A2P1G738

Pockets

1 pocket found on a 1 Å grid, 0 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	179	0.48	0.75	24	empty

Interfaces

1 interface between chains.

A–B · 684 Å² buried · 10 hydrogen bonds · protein-protein

Compared structures

6LPA · The nsp1 protein of a new porcine coronavirus · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt A0A2P1G738
Elsewhere: RCSB PDB 6LPA · PDBe 6LPA · UniProt A0A2P1G738

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