Research workbench
Two-component system protein mediate signal transduction
Analyse Two-component system protein mediate signal transduction in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 6LKJ
- Type
- protein
- Length
- 294 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- ABC transporter, solute-binding protein
- UniProt
- X5DVD1
- Ligands
- BGP
- Pockets
- 3 · best druggability 0.70
Structure
x-ray diffraction · 1 distinct chain · 42% helix, 21% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | ABC transporter, solute-binding protein | protein | 294 | 42% helix, 21% strand | X5DVD1 |
Ligands and binding sites
- BGP · 6-O-phosphono-beta-D-galactopyranose · ligand · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
3 pockets found on a 1 Å grid, 2 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 93 | 0.70 | 0.93 | 20 | BGP |
| 2 | 185 | 0.53 | 0.79 | 31 | empty |
| 3 | 59 | 0.45 | 0.83 | 17 | empty |
Compared structures
- 6LKJ · Two-component system protein mediate signal transduction · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt X5DVD1
- Elsewhere: RCSB PDB 6LKJ · PDBe 6LKJ · UniProt X5DVD1
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