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X-ray structure of synthetic GB1 domain with mutations K10(DVA), T11V

Analyse X-ray structure of synthetic GB1 domain with mutations K10(DVA), T11V in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 6LJI
Type: protein
Length: 112 residues
Chains: 2
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Immunoglobulin G-binding protein G
UniProt: P06654
Pockets: 1 · best druggability 0.36

Structure

x-ray diffraction · 1 distinct chain · 25% helix, 46% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A, B	Immunoglobulin G-binding protein G	protein	56	25% helix, 46% strand	P06654

Pockets

1 pocket found on a 1 Å grid, 0 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	70	0.36	0.77	22	empty

Interfaces

1 interface between chains.

A–B · 312 Å² buried · 0 hydrogen bonds · protein-protein

Modifications

Observed in the structure: 2 d-amino (D-amino acid).

Compared structures

6LJI · X-ray structure of synthetic GB1 domain with mutations K10(DVA), T11V · the same entry in another collection · chain A against A, TM-score 1.00
P06654 · AlphaFold monomer V2.0 prediction for immunoglobulin G-binding protein G (P06654) · a predicted model of the same protein · chain A against A, TM-score 0.93

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt P06654
Elsewhere: RCSB PDB 6LJI · PDBe 6LJI · UniProt P06654

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