Research workbench
Semet crl protein of arabidopsis
Analyse Semet crl protein of arabidopsis in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 6LIY
- Type
- protein
- Length
- 391 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Chromophore lyase crl, chloroplastic
- EC
- 4.-.-.-
- UniProt
- Q9FI46
- Pockets
- 5 · best druggability 0.86
Structure
x-ray diffraction · 2 distinct chains · 19% helix, 43% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Chromophore lyase crl, chloroplastic (EC 4.-.-.-) | protein | 195 | 19% helix, 43% strand | Q9FI46 |
| B | Chromophore lyase crl, chloroplastic (EC 4.-.-.-) | protein | 196 | 19% helix, 43% strand | Q9FI46 |
Ligands and binding sites
- MES · 2-(N-morpholino)-ethanesulfonic acid · additive · 2 copies · chains A, B
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
5 pockets found on a 1 Å grid, 3 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 714 | 0.86 | 0.89 | 51 | MES |
| 2 | 105 | 0.66 | 0.90 | 35 | empty |
| 3 | 235 | 0.53 | 0.77 | 38 | empty |
| 4 | 98 | 0.48 | 0.81 | 21 | empty |
| 5 | 120 | 0.39 | 0.74 | 18 | empty |
Interfaces
1 interface between chains.
- A–B · 1232 Ų buried · 21 hydrogen bonds · protein-protein
Modifications
Observed in the structure: 6 modified, 3 disulfide (engineered, disulfide).
Compared structures
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q9FI46
- Elsewhere: RCSB PDB 6LIY · PDBe 6LIY · UniProt Q9FI46
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