Research workbench
Crl protein of arabidopsis
Analyse Crl protein of arabidopsis in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 6LIX
- Type
- protein
- Length
- 391 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Chromophore lyase crl, chloroplastic
- EC
- 4.-.-.-
- UniProt
- Q9FI46
- Pockets
- 4 · best druggability 0.85
Structure
x-ray diffraction · 2 distinct chains · 16% helix, 44% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Chromophore lyase crl, chloroplastic (EC 4.-.-.-) | protein | 195 | 16% helix, 44% strand | Q9FI46 |
| B | Chromophore lyase crl, chloroplastic (EC 4.-.-.-) | protein | 196 | 16% helix, 45% strand | Q9FI46 |
Ligands and binding sites
- MES · 2-(N-morpholino)-ethanesulfonic acid · additive · 2 copies · chains A, B
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
4 pockets found on a 1 Å grid, 3 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 756 | 0.85 | 0.88 | 51 | MES |
| 2 | 258 | 0.63 | 0.81 | 53 | empty |
| 3 | 182 | 0.60 | 0.82 | 34 | empty |
| 4 | 114 | 0.38 | 0.74 | 18 | empty |
Interfaces
1 interface between chains.
- A–B · 1177 Ų buried · 19 hydrogen bonds · protein-protein
Modifications
Observed in the structure: 6 disulfide (disulfide).
Compared structures
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q9FI46
- Elsewhere: RCSB PDB 6LIX · PDBe 6LIX · UniProt Q9FI46
GL1X is a live explorer of the GenesisL1 blockchain. Turn on JavaScript for search, charts and interactive views.