Research workbench
Crystal structure of thsa
Analyse Crystal structure of thsa in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 6LHX
- Type
- protein
- Length
- 1,726 residues
- Chains
- 4
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Thsa
- UniProt
- J8G6Z1
- Pockets
- 20 · best druggability 0.82
Structure
x-ray diffraction · 4 distinct chains · 48% helix, 15% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Thsa | protein | 461 | 49% helix, 13% strand | J8G6Z1 |
| B | Thsa | protein | 406 | 47% helix, 14% strand | J8G6Z1 |
| C | Thsa | protein | 458 | 50% helix, 15% strand | J8G6Z1 |
| D | Thsa | protein | 401 | 47% helix, 17% strand | J8G6Z1 |
Pockets
20 pockets found on a 1 Å grid, 16 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 476 | 0.82 | 0.89 | 56 | empty |
| 2 | 760 | 0.82 | 0.85 | 95 | empty |
| 3 | 388 | 0.79 | 0.88 | 79 | empty |
| 4 | 279 | 0.75 | 0.89 | 45 | empty |
| 5 | 384 | 0.74 | 0.85 | 41 | empty |
Interfaces
5 interfaces between chains.
- A–B · 2376 Ų buried · 37 hydrogen bonds · protein-protein
- C–D · 2147 Ų buried · 29 hydrogen bonds · protein-protein
- A–C · 715 Ų buried · 14 hydrogen bonds · protein-protein
- B–C · 568 Ų buried · 8 hydrogen bonds · protein-protein
- A–D · 486 Ų buried · 6 hydrogen bonds · protein-protein
Modifications
Observed in the structure: 31 modified (engineered).
Compared structures
- 6LHX · Crystal structure of ThsA · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt J8G6Z1
- Elsewhere: RCSB PDB 6LHX · PDBe 6LHX · UniProt J8G6Z1
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