Research workbench
Crystal structure of PCB4SCFV(HN56D) in complex with PCB#77
Analyse Crystal structure of PCB4SCFV(HN56D) in complex with PCB#77 in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 6LFX
- Type
- protein
- Length
- 239 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- PCB4SCFV(HN56D)
- Ligands
- OM4
- Pockets
- 4 · best druggability 0.60
Structure
x-ray diffraction · 1 distinct chain · 5% helix, 50% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | PCB4SCFV(HN56D) | protein | 239 | 5% helix, 50% strand | — |
Ligands and binding sites
- OM4 · 1,2-bis(chloranyl)-4-(3-chloranyl-4-methoxy-phenyl) benzene · ligand · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
4 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 109 | 0.60 | 0.87 | 25 | OM4 |
| 2 | 116 | 0.41 | 0.76 | 21 | empty |
| 3 | 110 | 0.35 | 0.73 | 24 | empty |
| 4 | 70 | 0.30 | 0.74 | 17 | empty |
Modifications
Observed in the structure: 2 disulfide (disulfide).
Compared structures
- 6LFX · Crystal structure of PCB4scFv(hN56D) in complex with PCB#77 · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Elsewhere: RCSB PDB 6LFX · PDBe 6LFX
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