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Structure of RRM2 domain of DND1 protein

Analyse Structure of RRM2 domain of DND1 protein in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 6LE1
Type: protein
Length: 89 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Dead end protein homolog 1
UniProt: Q8IYX4
Ligands: SO4

Structure

x-ray diffraction · 1 distinct chain · 31% helix, 25% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Dead end protein homolog 1	protein	89	31% helix, 25% strand	Q8IYX4

Ligands and binding sites

SO4 · Sulfate ion · ion · chains A
GOL · Glycerol · additive · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Modifications

Observed in the structure: 2 modified (engineered).

Compared structures

6LE1 · Structure of RRM2 domain of DND1 protein · the same entry in another collection · chain A against A, TM-score 1.00
Q8IYX4 · AlphaFold monomer V2.0 prediction for dead end protein homolog 1 (Q8IYX4) · a predicted model of the same protein · chain A against A, TM-score 0.75

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt Q8IYX4
Elsewhere: RCSB PDB 6LE1 · PDBe 6LE1 · UniProt Q8IYX4

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