Research workbench
Crystal structure of yeast STN1
Analyse Crystal structure of yeast STN1 in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 6LBS
- Type
- protein
- Length
- 884 residues
- Chains
- 6
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- KLLA0C11825P
- UniProt
- Q6CTL1
- Pockets
- 5 · best druggability 0.43
Structure
x-ray diffraction · 6 distinct chains · 53% helix, 19% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | KLLA0C11825P | protein | 148 | 54% helix, 20% strand | Q6CTL1 |
| B | KLLA0C11825P | protein | 146 | 51% helix, 20% strand | Q6CTL1 |
| C | KLLA0C11825P | protein | 144 | 53% helix, 16% strand | Q6CTL1 |
| D | KLLA0C11825P | protein | 150 | 53% helix, 19% strand | Q6CTL1 |
| E | KLLA0C11825P | protein | 148 | 54% helix, 20% strand | Q6CTL1 |
| F | KLLA0C11825P | protein | 148 | 54% helix, 20% strand | Q6CTL1 |
Pockets
5 pockets found on a 1 Å grid, 0 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 78 | 0.43 | 0.80 | 13 | empty |
| 2 | 53 | 0.43 | 0.83 | 13 | empty |
| 3 | 69 | 0.37 | 0.77 | 12 | empty |
| 4 | 56 | 0.29 | 0.75 | 15 | empty |
| 5 | 68 | 0.29 | 0.73 | 15 | empty |
Interfaces
5 interfaces between chains.
- A–B · 728 Ų buried · 1 hydrogen bond · protein-protein
- E–F · 714 Ų buried · 2 hydrogen bonds · protein-protein
- C–D · 528 Ų buried · 1 hydrogen bond · protein-protein
- D–E · 343 Ų buried · 2 hydrogen bonds · protein-protein
- B–C · 312 Ų buried · 1 hydrogen bond · protein-protein
Modifications
Observed in the structure: 30 modified (engineered).
Compared structures
- 6LBS · Crystal structure of yeast Stn1 · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q6CTL1
- Elsewhere: RCSB PDB 6LBS · PDBe 6LBS · UniProt Q6CTL1
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