Research workbench
Structure of mouse gld-2 (terminal nucleotidyltransferase 2, TENT2)
Analyse Structure of mouse gld-2 (terminal nucleotidyltransferase 2, TENT2) in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 6LBJ
- Type
- protein
- Length
- 652 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- POLY(A) RNA polymerase GLD2
- EC
- 2.7.7.19
- UniProt
- Q91YI6
- Pockets
- 9 · best druggability 0.74
Structure
x-ray diffraction · 2 distinct chains · 46% helix, 13% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | POLY(A) RNA polymerase GLD2 (EC 2.7.7.19) | protein | 324 | 45% helix, 14% strand | Q91YI6 |
| B | POLY(A) RNA polymerase GLD2 (EC 2.7.7.19) | protein | 328 | 47% helix, 13% strand | Q91YI6 |
Pockets
9 pockets found on a 1 Å grid, 3 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 834 | 0.74 | 0.79 | 58 | empty |
| 2 | 735 | 0.72 | 0.79 | 49 | empty |
| 3 | 61 | 0.65 | 0.93 | 17 | empty |
| 4 | 50 | 0.43 | 0.83 | 17 | empty |
| 5 | 102 | 0.41 | 0.77 | 21 | empty |
Interfaces
1 interface between chains.
- A–B · 647 Ų buried · 4 hydrogen bonds · protein-protein
Compared structures
- 6LBJ · Structure of mouse GLD-2 (Terminal nucleotidyltransferase 2, TENT2) · the same entry in another collection · chain A against A, TM-score 1.00
- Q91YI6 · AlphaFold monomer V2.0 prediction for POLY(A) RNA polymerase GLD2 (Q91YI6) · a predicted model of the same protein · chain B against A, TM-score 0.99
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q91YI6
- Elsewhere: RCSB PDB 6LBJ · PDBe 6LBJ · UniProt Q91YI6
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