Research workbench

H2-ld A1A2 complexed with A5 peptide

Analyse H2-ld A1A2 complexed with A5 peptide in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 6L9K
Type: protein
Length: 184 residues
Chains: 2
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: H2-ld A1A2; Ser-pro-ser-tyr-ala-tyr-his-gln-phe
Pockets: 1 · best druggability 0.36

Structure

x-ray diffraction · 2 distinct chains · 37% helix, 32% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	H2-ld A1A2	protein	175	39% helix, 33% strand	—
Q	Ser-pro-ser-tyr-ala-tyr-his-gln-phe	protein	9	0% helix, 0% strand	—

Pockets

1 pocket found on a 1 Å grid, 0 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	65	0.36	0.77	18	empty

Interfaces

1 interface between chains.

A–Q · 900 Å² buried · 16 hydrogen bonds · protein-protein

Modifications

Observed in the structure: 1 disulfide (disulfide).

Compared structures

6L9K · H2-Ld a1a2 complexed with A5 peptide · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Elsewhere: RCSB PDB 6L9K · PDBe 6L9K

GL1X is a live explorer of the GenesisL1 blockchain. Turn on JavaScript for search, charts and interactive views.