Research workbench
Characterization and structural analysis of a thermostable zearalenone-degrading enzyme
Analyse Characterization and structural analysis of a thermostable… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 6L7M
- Type
- protein
- Length
- 1,068 residues
- Chains
- 4
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Ab hydrolase-1 domain-containing protein
- UniProt
- A0A4Q4UBE4
- Pockets
- 6 · best druggability 0.80
Structure
x-ray diffraction · 1 distinct chain · 47% helix, 17% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, B, C, D | Ab hydrolase-1 domain-containing protein | protein | 267 | 47% helix, 17% strand | A0A4Q4UBE4 |
Pockets
6 pockets found on a 1 Å grid, 5 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 232 | 0.80 | 0.93 | 41 | empty |
| 2 | 319 | 0.80 | 0.90 | 46 | empty |
| 3 | 162 | 0.79 | 0.94 | 34 | empty |
| 4 | 102 | 0.73 | 0.94 | 26 | empty |
| 5 | 60 | 0.72 | 0.98 | 17 | empty |
Interfaces
4 interfaces between chains.
- B–D · 759 Ų buried · 14 hydrogen bonds · protein-protein
- A–C · 742 Ų buried · 14 hydrogen bonds · protein-protein
- A–B · 717 Ų buried · 11 hydrogen bonds · protein-protein
- C–D · 691 Ų buried · 10 hydrogen bonds · protein-protein
Compared structures
- 6L7M · Characterization and structural analysis of a thermostable zearale -degrading enzyme · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt A0A4Q4UBE4
- Elsewhere: RCSB PDB 6L7M · PDBe 6L7M · UniProt A0A4Q4UBE4
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