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Structure of 6-hydroxypseudooxynicotine (6-hpon) amine oxidase (hisd) from pseudomonas geniculata N1
Analyse Structure of 6-hydroxypseudooxynicotine (6-hpon) amine oxidase (hisd) from… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 6L6J
- Type
- protein
- Length
- 669 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- OXIDORED_FMN domain-containing protein
- UniProt
- A0A0L8AFM7
- Ligands
- FMN, SF4, ADP, SO4
- Pockets
- 4 · best druggability 0.78
Structure
x-ray diffraction · 1 distinct chain · 35% helix, 19% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | OXIDORED_FMN domain-containing protein | protein | 669 | 35% helix, 19% strand | A0A0L8AFM7 |
Ligands and binding sites
- FMN · Flavin mononucleotide · ligand · chains A
- SF4 · Iron/sulfur cluster · ligand · chains A
- ADP · Adenosine-5'-diphosphate · ligand · chains A
- SO4 · Sulfate ion · ion · 3 copies · chains A
- FLC · Citrate anion · additive · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
4 pockets found on a 1 Å grid, 2 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 419 | 0.78 | 0.87 | 58 | FMN |
| 2 | 242 | 0.58 | 0.79 | 40 | ADP |
| 3 | 115 | 0.40 | 0.76 | 19 | empty |
| 4 | 52 | 0.35 | 0.79 | 14 | empty |
Compared structures
- 6L6J · Structure of 6-hydroxypseudooxynicotine (6-HPON) amine oxidase (HisD) from Pseudomonas… · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt A0A0L8AFM7
- Elsewhere: RCSB PDB 6L6J · PDBe 6L6J · UniProt A0A0L8AFM7
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