Research workbench
Crystal structure of ggcgt in complex with udp-gal
Analyse Crystal structure of ggcgt in complex with udp-gal in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 6L5Q
- Type
- protein
- Length
- 432 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Ggcgt
- Ligands
- GDU
- Pockets
- 4 · best druggability 0.80
Structure
x-ray diffraction · 1 distinct chain · 46% helix, 15% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Ggcgt | protein | 432 | 46% helix, 15% strand | — |
Ligands and binding sites
- GDU · Galactose-uridine-5'-diphosphate · ligand · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
4 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 775 | 0.80 | 0.83 | 64 | GDU |
| 2 | 88 | 0.36 | 0.75 | 17 | empty |
| 3 | 56 | 0.35 | 0.78 | 14 | empty |
| 4 | 71 | 0.30 | 0.73 | 18 | empty |
Compared structures
- 6L5Q · crystal structure of GgCGT in complex with UDP-Gal · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Elsewhere: RCSB PDB 6L5Q · PDBe 6L5Q
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