Research workbench
Crystal structure of a novel fold protein GP72 from the freshwater cyanophage MIC1
Analyse Crystal structure of a novel fold protein GP72 from the freshwater cyanophage… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 6L2W
- Type
- protein
- Length
- 234 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Freshwater cyanophage protein
- UniProt
- A0A4Y5TR47
- Pockets
- 1 · best druggability 0.59
Structure
x-ray diffraction · 2 distinct chains · 32% helix, 28% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Freshwater cyanophage protein | protein | 116 | 32% helix, 27% strand | A0A4Y5TR47 |
| B | Freshwater cyanophage protein | protein | 118 | 31% helix, 30% strand | A0A4Y5TR47 |
Pockets
1 pocket found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 244 | 0.59 | 0.80 | 50 | empty |
Interfaces
1 interface between chains.
- A–B · 1090 Ų buried · 12 hydrogen bonds · protein-protein
Compared structures
- 6L2W · Crystal structure of a novel fold protein Gp72 from the freshwater cyanophage Mic1 · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt A0A4Y5TR47
- Elsewhere: RCSB PDB 6L2W · PDBe 6L2W · UniProt A0A4Y5TR47
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