Research workbench
The crystal structure of competence or damage-inducible protein from enterobacter asburiae
Analyse The crystal structure of competence or damage-inducible protein from… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 6L19
- Type
- protein
- Length
- 323 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Pncc family amidohydrolase
- UniProt
- A0A495LDQ0
- Ligands
- NA, CL
- Pockets
- 2 · best druggability 0.63
Structure
x-ray diffraction · 2 distinct chains · 45% helix, 22% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Pncc family amidohydrolase | protein | 164 | 45% helix, 22% strand | A0A495LDQ0 |
| B | Pncc family amidohydrolase | protein | 159 | 46% helix, 22% strand | A0A495LDQ0 |
Ligands and binding sites
- NA · Sodium ion · metal · 2 copies · chains A, B
- CL · Chloride ion · ion · chains A
- GOL · Glycerol · additive · chains A, B
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
2 pockets found on a 1 Å grid, 2 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 352 | 0.63 | 0.78 | 41 | NA |
| 2 | 368 | 0.62 | 0.78 | 46 | NA |
Interfaces
1 interface between chains.
- A–B · 840 Ų buried · 25 hydrogen bonds · protein-protein
Compared structures
- 6L19 · The crystal structure of competence or damage-inducible protein from Enterobacter asburiae · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt A0A495LDQ0
- Elsewhere: RCSB PDB 6L19 · PDBe 6L19 · UniProt A0A495LDQ0
GL1X is a live explorer of the GenesisL1 blockchain. Turn on JavaScript for search, charts and interactive views.