Research workbench
Crystal structural of human glutathione-specific gamma- glutamylcyclotransferase 2 (CHAC2)MUTANT with glutamate 83 replaced by glutamine
Analyse Crystal structural of human glutathione-specific gamma… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 6KY1
- Type
- protein
- Length
- 512 residues
- Chains
- 3
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Glutathione-specific gamma-glutamylcyclotransferase 2
- EC
- 4.3.2.7
- UniProt
- Q8WUX2
- Pockets
- 5 · best druggability 0.76
Structure
x-ray diffraction · 3 distinct chains · 28% helix, 39% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Glutathione-specific gamma-glutamylcyclotransferase 2 (EC 4.3.2.7) | protein | 180 | 28% helix, 37% strand | Q8WUX2 |
| B | Glutathione-specific gamma-glutamylcyclotransferase 2 (EC 4.3.2.7) | protein | 180 | 29% helix, 37% strand | Q8WUX2 |
| C | Glutathione-specific gamma-glutamylcyclotransferase 2 (EC 4.3.2.7) | protein | 152 | 26% helix, 43% strand | Q8WUX2 |
Pockets
5 pockets found on a 1 Å grid, 4 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 428 | 0.76 | 0.85 | 35 | empty |
| 2 | 468 | 0.75 | 0.84 | 36 | empty |
| 3 | 271 | 0.58 | 0.78 | 36 | empty |
| 4 | 182 | 0.51 | 0.77 | 22 | empty |
| 5 | 126 | 0.42 | 0.76 | 25 | empty |
Interfaces
3 interfaces between chains.
- A–B · 432 Ų buried · 2 hydrogen bonds · protein-protein
- B–C · 300 Ų buried · 3 hydrogen bonds · protein-protein
- A–C · 17 Ų buried · 0 hydrogen bonds · protein-protein
Compared structures
- 6KY1 · Crystal structural of human glutathione-specific gamma-glutamylcyclotransferase 2… · the same entry in another collection · chain A against A, TM-score 1.00
- Q8WUX2 · AlphaFold monomer V2.0 prediction for glutathione-specific gamma… · a predicted model of the same protein · chain C against A, TM-score 0.99
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q8WUX2
- Elsewhere: RCSB PDB 6KY1 · PDBe 6KY1 · UniProt Q8WUX2
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