Research workbench
Notothenia coriiceps TRAF5
Analyse Notothenia coriiceps TRAF5 in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 6KU5
- Type
- protein
- Length
- 408 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- TRAF5
- Pockets
- 2 · best druggability 0.66
Structure
x-ray diffraction · 2 distinct chains · 28% helix, 27% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | TRAF5 | protein | 201 | 29% helix, 27% strand | — |
| B | TRAF5 | protein | 207 | 28% helix, 27% strand | — |
Pockets
2 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 732 | 0.66 | 0.74 | 61 | empty |
| 2 | 71 | 0.36 | 0.77 | 16 | empty |
Interfaces
1 interface between chains.
- A–B · 257 Ų buried · 2 hydrogen bonds · protein-protein
Compared structures
- 6KU5 · Notothenia coriiceps TRAF5 · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Elsewhere: RCSB PDB 6KU5 · PDBe 6KU5
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