Research workbench
Crystal structure of a yeast hypothetical protein-a structure from BNL'S human proteome project
Analyse Crystal structure of a yeast hypothetical protein-a structure from BNL'S human… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 1B54
- Type
- protein
- Length
- 230 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Yeast hypothetical protein
- UniProt
- P38197
- Ligands
- PLP
- Pockets
- 1 · best druggability 0.39
Structure
x-ray diffraction · 1 distinct chain · 44% helix, 18% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Yeast hypothetical protein | protein | 230 | 44% helix, 18% strand | P38197 |
Ligands and binding sites
- PLP · Pyridoxal-5'-phosphate · ligand · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
1 pocket found on a 1 Å grid, 0 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 119 | 0.39 | 0.74 | 24 | PLP |
Modifications
Observed in the structure: 1 cofactor (pyridoxal phosphate Schiff base).
Compared structures
- 1B54 · Crystal structure of a yeast hypothetical protein-a structure from BNL'S human proteome… · the same entry in another collection · chain A against A, TM-score 1.00
- P38197 · AlphaFold monomer V2.0 prediction for pyridoxal phosphate homeostasis protein (P38197) · a predicted model of the same protein · chain A against A, TM-score 0.99
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P38197
- Elsewhere: RCSB PDB 1B54 · PDBe 1B54 · UniProt P38197
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