Research workbench
343 K cryoem structure of sso-kari in complex with MG2+
Analyse 343 K cryoem structure of sso-kari in complex with MG2+ in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 6KPE
- Type
- protein
- Length
- 3,936 residues
- Chains
- 12
- Method
- electron microscopy
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Ketol-acid reductoisomerase
- UniProt
- A0A157T175
- Ligands
- MG
- Pockets
- 20 · best druggability 0.79
Structure
electron microscopy · 1 distinct chain · 55% helix, 10% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, B, C, D, E, F, G, H, I, J, K, L | Ketol-acid reductoisomerase | protein | 328 | 55% helix, 10% strand | A0A157T175 |
Ligands and binding sites
- MG · Magnesium ion · metal · 12 copies · chains A, B, C, D, E, F, G, H, I, J, K, L
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
20 pockets found on a 1 Å grid, 20 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 601 | 0.79 | 0.85 | 64 | MG |
| 2 | 601 | 0.79 | 0.85 | 56 | MG |
| 3 | 565 | 0.78 | 0.85 | 58 | MG |
| 4 | 591 | 0.78 | 0.84 | 56 | MG |
| 5 | 595 | 0.78 | 0.84 | 56 | MG |
Interfaces
30 interfaces between chains.
- C–D · 5821 Ų buried · 32 hydrogen bonds · protein-protein
- A–B · 5820 Ų buried · 34 hydrogen bonds · protein-protein
- E–F · 5811 Ų buried · 33 hydrogen bonds · protein-protein
- G–H · 5799 Ų buried · 30 hydrogen bonds · protein-protein
- I–J · 5783 Ų buried · 32 hydrogen bonds · protein-protein
Compared structures
- 6KPE · 343 K cryoEM structure of Sso-KARI in complex with Mg2+ · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt A0A157T175
- Elsewhere: RCSB PDB 6KPE · PDBe 6KPE · UniProt A0A157T175
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