Research workbench
The crystal structure of the BALDIBIS/IDD9 bound to the homodimeric SCL3
Analyse The crystal structure of the BALDIBIS/IDD9 bound to the homodimeric SCL3 in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 6KPD
- Type
- protein
- Length
- 390 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Scarecrow-like protein 3; Peptide from zinc finger protein baldibis
- UniProt
- Q9LPR8, Q944L3
- Pockets
- 3 · best druggability 0.74
Structure
x-ray diffraction · 2 distinct chains · 52% helix, 16% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| C | Scarecrow-like protein 3 | protein | 376 | 51% helix, 16% strand | Q9LPR8 |
| B | Peptide from zinc finger protein baldibis | protein | 14 | 71% helix, 0% strand | Q944L3 |
Pockets
3 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 593 | 0.74 | 0.81 | 35 | empty |
| 2 | 65 | 0.35 | 0.76 | 14 | empty |
| 3 | 62 | 0.30 | 0.74 | 12 | empty |
Interfaces
1 interface between chains.
- C–B · 520 Ų buried · 2 hydrogen bonds · protein-protein
Compared structures
- 6KPD · The crystal structure of the BALDIBIS/IDD9 bound to the homodimeric SCL3 · the same entry in another collection · chain C against C, TM-score 1.00
- Q9LPR8 · AlphaFold monomer V2.0 prediction for scarecrow-like protein 3 (Q9LPR8) · a predicted model of the same protein · chain C against A, TM-score 0.97
- Q944L3 · AlphaFold monomer V2.0 prediction for zinc finger protein baldibis (Q944L3) · a predicted model of the same protein · chain B against A, TM-score 0.54
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q9LPR8
- Every structure of UniProt Q944L3
- Elsewhere: RCSB PDB 6KPD · PDBe 6KPD · UniProt Q9LPR8 · UniProt Q944L3
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