Research workbench
Structure of sendai virus Y3/ALIX-BRO1 domain complex
Analyse Structure of sendai virus Y3/ALIX-BRO1 domain complex in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 6KP3
- Type
- protein
- Length
- 469 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Programmed cell death 6-interacting protein; C' protein
- UniProt
- Q8WUM4, Q5ECE0
- Pockets
- 5 · best druggability 0.64
Structure
x-ray diffraction · 2 distinct chains · 65% helix, 2% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Programmed cell death 6-interacting protein | protein | 357 | 61% helix, 3% strand | Q8WUM4 |
| B | C' protein | protein | 112 | 79% helix, 0% strand | Q5ECE0 |
Pockets
5 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 518 | 0.64 | 0.76 | 43 | empty |
| 2 | 229 | 0.50 | 0.75 | 23 | empty |
| 3 | 53 | 0.36 | 0.79 | 17 | empty |
| 4 | 58 | 0.34 | 0.78 | 17 | empty |
| 5 | 53 | 0.28 | 0.75 | 13 | empty |
Interfaces
1 interface between chains.
- A–B · 629 Ų buried · 6 hydrogen bonds · protein-protein
Compared structures
- 6KP3 · Structure of sendai virus Y3/ALIX-BRO1 domain complex · the same entry in another collection · chain A against A, TM-score 1.00
- Q8WUM4 · AlphaFold monomer V2.0 prediction for programmed cell death 6-interacting protein (Q8WUM4) · a predicted model of the same protein · chain A against A, TM-score 0.98
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q8WUM4
- Every structure of UniProt Q5ECE0
- Elsewhere: RCSB PDB 6KP3 · PDBe 6KP3 · UniProt Q8WUM4 · UniProt Q5ECE0
GL1X is a live explorer of the GenesisL1 blockchain. Turn on JavaScript for search, charts and interactive views.