Research workbench
Crystal structure of suwa (super WA20), a hyper-stable de novo protein with a dimeric bisecting topology
Analyse Crystal structure of suwa (super WA20), a hyper-stable de novo protein with a… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 6KOS
- Type
- protein
- Length
- 390 residues
- Chains
- 4
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Suwa (super WA20)
- Pockets
- 2 · best druggability 0.63
Structure
x-ray diffraction · 3 distinct chains · 92% helix, 0% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Suwa (super WA20) | protein | 101 | 91% helix, 0% strand | — |
| B, C | Suwa (super WA20) | protein | 97 | 92% helix, 0% strand | — |
| D | Suwa (super WA20) | protein | 95 | 93% helix, 0% strand | — |
Pockets
2 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 358 | 0.63 | 0.79 | 36 | empty |
| 2 | 172 | 0.42 | 0.74 | 26 | empty |
Interfaces
6 interfaces between chains.
- A–B · 3911 Ų buried · 28 hydrogen bonds · protein-protein
- C–D · 3763 Ų buried · 13 hydrogen bonds · protein-protein
- A–C · 309 Ų buried · 7 hydrogen bonds · protein-protein
- B–C · 231 Ų buried · 3 hydrogen bonds · protein-protein
- B–D · 65 Ų buried · 0 hydrogen bonds · protein-protein
Compared structures
- 6KOS · Crystal structure of SUWA (Super WA20), a hyper-stable de novo protein with a dimeric… · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Elsewhere: RCSB PDB 6KOS · PDBe 6KOS
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